Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35345

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,527,697	+				+0.1
3,527,833	+				+0.3
3,527,845	+				+1.0
3,527,846	-				+1.7
3,528,015	+		BPHYT_RS35340	0.30	-0.4
3,528,066	+		BPHYT_RS35340	0.39	-0.9
3,528,236	-		BPHYT_RS35340	0.68	-0.8
3,528,361	-		BPHYT_RS35340	0.89	-1.0
3,528,604	+		BPHYT_RS35345	0.13	+0.4
3,529,399	-		BPHYT_RS35345	0.70	-0.8
3,529,536	+		BPHYT_RS35345	0.80	-0.2
3,529,589	-		BPHYT_RS35345	0.84	-1.1
3,529,727	-				+1.7
3,529,817	-				+0.8
3,530,536	-		BPHYT_RS35350	0.69	+0.1
3,530,599	-		BPHYT_RS35350	0.76	+0.3
3,530,709	+		BPHYT_RS35350	0.88	-1.8
3,530,709	+		BPHYT_RS35350	0.88	+0.4
3,530,709	+		BPHYT_RS35350	0.88	+3.6