Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35325

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,522,833	+				-0.1
3,523,180	+		BPHYT_RS35320	0.17	+2.2
3,523,324	+		BPHYT_RS35320	0.36	+0.9
3,523,382	-		BPHYT_RS35320	0.44	+0.7
3,523,862	+				+1.5
3,523,934	+				-1.2
3,524,485	-		BPHYT_RS35325	0.48	-1.7
3,524,485	-		BPHYT_RS35325	0.48	-1.1
3,524,485	-		BPHYT_RS35325	0.48	+0.7
3,524,921	-		BPHYT_RS35325	0.79	+0.8