Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35120

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS35115 and BPHYT_RS35120 are separated by 59 nucleotidesBPHYT_RS35120 and BPHYT_RS35125 are separated by 209 nucleotides BPHYT_RS35115: BPHYT_RS35115 - phospholipase C, at 3,478,623 to 3,480,776 _RS35115 BPHYT_RS35120: BPHYT_RS35120 - hypothetical protein, at 3,480,836 to 3,481,150 _RS35120 BPHYT_RS35125: BPHYT_RS35125 - glycogen-debranching protein, at 3,481,360 to 3,483,348 _RS35125 Position (kb) 3480 3481 3482Strain fitness (log2 ratio) -1 0 1at 3479.960 kb on - strand, within BPHYT_RS35115at 3480.587 kb on - strandat 3480.868 kb on - strand, within BPHYT_RS35120at 3481.695 kb on - strand, within BPHYT_RS35125at 3481.916 kb on - strand, within BPHYT_RS35125at 3482.061 kb on - strand, within BPHYT_RS35125at 3482.109 kb on + strand, within BPHYT_RS35125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
remove
3,479,960 - BPHYT_RS35115 0.62 +1.4
3,480,587 - +0.5
3,480,868 - BPHYT_RS35120 0.10 -0.8
3,481,695 - BPHYT_RS35125 0.17 -1.4
3,481,916 - BPHYT_RS35125 0.28 -1.7
3,482,061 - BPHYT_RS35125 0.35 -1.2
3,482,109 + BPHYT_RS35125 0.38 -0.1

Or see this region's nucleotide sequence