Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35065

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,468,936	-		BPHYT_RS35060	0.51	-1.1
3,469,059	+		BPHYT_RS35060	0.60	-0.5
3,469,315	-		BPHYT_RS35060	0.78	-0.5
3,469,429	-		BPHYT_RS35060	0.85	-0.7
3,469,716	+				+3.2
3,469,731	+				-0.4
3,469,735	-				-2.1
3,469,735	-				-1.9
3,469,805	+				+0.1
3,469,805	+				-1.2
3,469,805	+				-0.0
3,469,806	-				-0.4
3,469,806	-				-0.6
3,469,806	-				-0.7
3,469,806	-				+0.3
3,469,806	-				+0.4
3,469,826	-				+0.2
3,469,847	-				-0.2
3,469,847	-				+0.9
3,469,962	+		BPHYT_RS35065	0.13	+0.7
3,469,968	+		BPHYT_RS35065	0.13	+0.5
3,469,969	-		BPHYT_RS35065	0.13	-1.0
3,470,166	+		BPHYT_RS35065	0.29	+1.6
3,470,166	+		BPHYT_RS35065	0.29	+0.3
3,470,167	-		BPHYT_RS35065	0.30	+0.2
3,470,167	-		BPHYT_RS35065	0.30	-0.2
3,470,199	+		BPHYT_RS35065	0.32	-0.2
3,470,239	-		BPHYT_RS35065	0.35	+0.7
3,470,343	+		BPHYT_RS35065	0.44	-1.2
3,470,382	+		BPHYT_RS35065	0.47	-1.0
3,470,592	-		BPHYT_RS35065	0.64	+0.3
3,470,619	+		BPHYT_RS35065	0.67	-1.0
3,470,625	+		BPHYT_RS35065	0.67	-0.7
3,470,685	+		BPHYT_RS35065	0.72	-3.1
3,470,686	-		BPHYT_RS35065	0.72	+0.3
3,470,686	-		BPHYT_RS35065	0.72	+0.1
3,470,947	+				+2.3
3,471,048	+				+0.2
3,471,048	+				+1.2
3,471,048	+				-0.4
3,471,049	-				-0.1
3,471,049	-				+0.5
3,471,105	+				-0.3
3,471,105	+				-1.2
3,471,106	-				+2.1
3,471,106	-				+0.2
3,471,125	+				-1.7
3,471,185	+				-1.2
3,471,418	-				-0.4
3,471,436	+				+0.3
3,471,437	-				-1.9
3,471,437	-				-0.5
3,471,612	+				+0.2
3,471,826	-				-0.2
3,471,847	+				+1.2
3,471,848	-				+0.5