Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35060

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,467,334	+				+0.6
3,467,455	+				-1.0
3,467,456	-				+0.0
3,467,456	-				-0.6
3,467,480	+				-1.1
3,467,481	-				+2.2
3,467,597	+				+0.5
3,467,856	-		BPHYT_RS35055	0.53	+0.2
3,467,970	-		BPHYT_RS35055	0.72	-1.2
3,468,053	+		BPHYT_RS35055	0.85	+0.3
3,468,054	-		BPHYT_RS35055	0.86	-0.6
3,468,073	+		BPHYT_RS35055	0.89	+1.0
3,468,073	+		BPHYT_RS35055	0.89	-0.6
3,468,074	-		BPHYT_RS35055	0.89	+1.2
3,468,075	+		BPHYT_RS35055	0.89	-0.1
3,468,075	+		BPHYT_RS35055	0.89	-1.5
3,468,075	+		BPHYT_RS35055	0.89	-2.0
3,468,154	+				-0.0
3,468,155	-				+0.1
3,468,155	-				-0.8
3,468,155	-				+0.8
3,468,361	-		BPHYT_RS35060	0.12	-1.2
3,468,369	+		BPHYT_RS35060	0.12	-1.6
3,468,370	-		BPHYT_RS35060	0.12	-1.0
3,468,936	-		BPHYT_RS35060	0.51	-1.1
3,469,059	+		BPHYT_RS35060	0.60	-0.5
3,469,315	-		BPHYT_RS35060	0.78	-0.5
3,469,429	-		BPHYT_RS35060	0.85	-0.7
3,469,716	+				+3.2
3,469,731	+				-0.4
3,469,735	-				-2.1
3,469,735	-				-1.9
3,469,805	+				+0.1
3,469,805	+				-1.2
3,469,805	+				-0.0
3,469,806	-				-0.4
3,469,806	-				-0.6
3,469,806	-				-0.7
3,469,806	-				+0.3
3,469,806	-				+0.4
3,469,826	-				+0.2
3,469,847	-				-0.2
3,469,847	-				+0.9
3,469,962	+		BPHYT_RS35065	0.13	+0.7
3,469,968	+		BPHYT_RS35065	0.13	+0.5
3,469,969	-		BPHYT_RS35065	0.13	-1.0
3,470,166	+		BPHYT_RS35065	0.29	+1.6
3,470,166	+		BPHYT_RS35065	0.29	+0.3
3,470,167	-		BPHYT_RS35065	0.30	+0.2
3,470,167	-		BPHYT_RS35065	0.30	-0.2
3,470,199	+		BPHYT_RS35065	0.32	-0.2
3,470,239	-		BPHYT_RS35065	0.35	+0.7
3,470,343	+		BPHYT_RS35065	0.44	-1.2
3,470,382	+		BPHYT_RS35065	0.47	-1.0
3,470,592	-		BPHYT_RS35065	0.64	+0.3
3,470,619	+		BPHYT_RS35065	0.67	-1.0
3,470,625	+		BPHYT_RS35065	0.67	-0.7