Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34990

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,448,395	+				+0.4
3,448,854	-		BPHYT_RS34985	0.45	+0.5
3,449,113	+		BPHYT_RS34985	0.71	-0.4
3,449,113	+		BPHYT_RS34985	0.71	-0.1
3,449,553	+		BPHYT_RS34990	0.14	+1.4
3,449,554	-		BPHYT_RS34990	0.14	+1.1
3,450,653	+				-0.9
3,450,656	-				+0.8
3,450,657	-				-0.8
3,451,050	+		BPHYT_RS34995	0.27	-2.5
3,451,579	+		BPHYT_RS34995	0.65	-0.0