Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34795

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,411,111	+				+0.3
3,411,858	-				-0.0
3,411,889	+				-0.2
3,411,898	-				-0.3
3,411,915	+				-1.2
3,411,989	-				+0.2
3,412,099	+		BPHYT_RS34800	0.22	-0.1
3,412,099	+		BPHYT_RS34800	0.22	+0.4
3,412,457	+				+0.6
3,412,458	-				-0.6
3,412,458	-				-0.2
3,412,461	+				-0.5
3,412,462	-				+1.4
3,412,462	-				+3.5
3,412,462	-				-0.3
3,412,462	-				-0.4
3,412,491	-				+0.1
3,412,610	-				+0.6
3,412,610	-				-1.3
3,412,610	-				-0.4
3,412,613	+				-2.2
3,412,614	-				-0.5
3,412,614	-				-0.4
3,412,614	-				+0.1
3,412,614	-				-0.9