Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34775

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,404,779	+				-0.5
3,404,779	+				+2.1
3,404,779	+				+0.7
3,404,780	-				-1.2
3,404,861	+		BPHYT_RS34765	0.25	-0.3
3,404,862	-		BPHYT_RS34765	0.25	+1.2
3,404,954	+		BPHYT_RS34765	0.50	-0.5
3,405,100	-				+0.0
3,405,103	-				+0.3
3,405,103	-				-0.5
3,405,128	+				-0.1
3,405,128	+				+1.2
3,405,128	+				-0.9
3,405,128	+				-2.5
3,405,129	-				-2.8
3,405,129	-				-1.3
3,405,429	+		BPHYT_RS34770	0.48	-0.0
3,405,430	-		BPHYT_RS34770	0.48	-0.2
3,405,444	+		BPHYT_RS34770	0.50	-0.2
3,405,634	+		BPHYT_RS34770	0.81	+0.3
3,405,634	+		BPHYT_RS34770	0.81	-1.5
3,405,634	+		BPHYT_RS34770	0.81	-0.5
3,405,635	-		BPHYT_RS34770	0.81	+0.9
3,405,714	-				-0.1
3,405,748	+				-0.6
3,405,748	+				+1.2
3,405,749	-				+1.3
3,405,906	-		BPHYT_RS34775	0.17	-1.4
3,405,906	-		BPHYT_RS34775	0.17	+1.1
3,406,194	-		BPHYT_RS34775	0.47	+0.8
3,406,262	+		BPHYT_RS34775	0.55	+0.8
3,406,641	-				-0.2
3,406,641	-				-1.0
3,406,643	-				-2.9
3,406,834	+				-1.3
3,406,836	+				+0.1
3,406,837	-				-3.3
3,406,837	-				-2.6
3,407,091	+		BPHYT_RS34780	0.15	+1.2
3,407,193	+		BPHYT_RS34780	0.27	-2.7
3,407,346	+		BPHYT_RS34780	0.45	-3.2
3,407,347	-		BPHYT_RS34780	0.45	-1.0
3,407,393	-		BPHYT_RS34780	0.50	+0.6