Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34750

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,398,835	+				+0.5
3,398,871	+		BPHYT_RS34740	0.22	+0.0
3,398,872	-		BPHYT_RS34740	0.22	+0.8
3,398,888	-		BPHYT_RS34740	0.28	-0.2
3,398,975	-		BPHYT_RS34740	0.59	-0.2
3,399,170	+				+0.2
3,399,171	-				-1.1
3,399,171	-				-0.1
3,399,222	-				-1.4
3,399,266	+				+1.4
3,399,343	-		BPHYT_RS34745	0.38	+3.2
3,399,450	+		BPHYT_RS34745	0.89	+0.2
3,399,496	+				-0.3
3,399,496	+				-1.2
3,399,496	+				-1.3
3,399,496	+				+0.2
3,399,496	+				+0.2
3,399,496	+				+0.0
3,399,496	+				+0.0
3,399,497	-				-0.6
3,399,497	-				-0.5
3,399,497	-				+0.4
3,399,497	-				-0.9
3,399,497	-				-0.1
3,399,500	+				-0.3
3,399,500	+				+0.1
3,399,501	-				-0.6
3,399,501	-				-0.2
3,399,526	-				-0.5
3,399,526	-				+0.4
3,399,526	-				-0.7
3,399,526	-				-0.7
3,399,526	-				+0.3
3,399,710	+				-0.1
3,399,710	+				-2.2
3,399,710	+				-1.4
3,399,710	+				-0.2
3,399,710	+				-1.2
3,399,722	+				-0.2
3,399,737	+				+2.3
3,399,737	+				+0.4
3,399,738	-				+0.9
3,399,738	-				+0.4
3,399,777	+				+0.4
3,399,777	+				-0.9
3,399,778	-				+1.0
3,399,821	+				+0.3
3,399,821	+				+0.8
3,399,821	+				-2.5
3,399,821	+				+0.8
3,399,822	-				-0.8
3,399,822	-				+0.4
3,399,822	-				+3.3
3,399,822	-				-0.5
3,399,822	-				-0.3
3,399,822	-				+0.3
3,399,951	+		BPHYT_RS34750	0.21	+0.1
3,399,952	-		BPHYT_RS34750	0.21	+0.7
3,399,952	-		BPHYT_RS34750	0.21	+0.6
3,399,953	+		BPHYT_RS34750	0.21	-0.2
3,399,953	+		BPHYT_RS34750	0.21	+0.1
3,399,953	+		BPHYT_RS34750	0.21	-0.3
3,399,953	+		BPHYT_RS34750	0.21	+0.3
3,399,954	-		BPHYT_RS34750	0.21	-0.1
3,399,954	-		BPHYT_RS34750	0.21	+1.2
3,399,954	-		BPHYT_RS34750	0.21	+0.6
3,399,954	-		BPHYT_RS34750	0.21	-0.6
3,399,971	-		BPHYT_RS34750	0.25	-0.6
3,399,982	+		BPHYT_RS34750	0.26	+0.4
3,399,982	+		BPHYT_RS34750	0.26	-0.6
3,399,982	+		BPHYT_RS34750	0.26	+0.4
3,399,982	+		BPHYT_RS34750	0.26	-0.5
3,399,983	-		BPHYT_RS34750	0.27	-1.0
3,399,983	-		BPHYT_RS34750	0.27	-1.9
3,400,228	+		BPHYT_RS34750	0.71	+0.6
3,400,228	+		BPHYT_RS34750	0.71	-0.1
3,400,229	-		BPHYT_RS34750	0.71	-0.6
3,400,321	-		BPHYT_RS34750	0.88	+1.9
3,400,334	+				-0.4
3,400,354	+				+0.1
3,400,433	-				+0.3
3,400,685	-		BPHYT_RS34755	0.18	-0.0
3,400,685	-		BPHYT_RS34755	0.18	+0.3
3,400,693	+		BPHYT_RS34755	0.19	-0.1
3,400,693	+		BPHYT_RS34755	0.19	+0.3
3,400,726	+		BPHYT_RS34755	0.22	-0.2
3,400,759	+		BPHYT_RS34755	0.25	-0.1
3,400,760	-		BPHYT_RS34755	0.25	-0.1
3,400,760	-		BPHYT_RS34755	0.25	+0.6
3,401,030	-		BPHYT_RS34755	0.51	-0.1
3,401,030	-		BPHYT_RS34755	0.51	+0.4
3,401,085	-				+1.4
3,401,303	-		BPHYT_RS34755	0.78	+0.1
3,401,333	+		BPHYT_RS34755	0.81	+0.7
3,401,334	-		BPHYT_RS34755	0.81	-1.5
3,401,363	+		BPHYT_RS34755	0.83	-0.5