Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34645

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,379,270	+				-3.1
3,379,271	-				+0.2
3,379,793	-		BPHYT_RS34640	0.77	-0.6
3,379,865	-		BPHYT_RS34640	0.88	-0.6
3,379,948	+				+0.4
3,379,949	-				-0.7
3,380,019	+				-0.8
3,380,020	-				+0.5
3,380,020	-				+0.1
3,380,148	-		BPHYT_RS34645	0.14	-0.3
3,380,148	-		BPHYT_RS34645	0.14	+0.5
3,380,154	-		BPHYT_RS34645	0.15	+2.0
3,380,247	+		BPHYT_RS34645	0.29	+2.4
3,380,248	-		BPHYT_RS34645	0.30	-1.0
3,380,635	-		BPHYT_RS34645	0.89	+2.1
3,380,654	+				-0.1
3,380,800	-				-1.1
3,381,094	-		BPHYT_RS34650	0.28	+0.4
3,381,094	-		BPHYT_RS34650	0.28	-1.0
3,381,240	-		BPHYT_RS34650	0.42	-0.3
3,381,642	-		BPHYT_RS34650	0.81	+1.4