Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34610

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,373,556	-				-0.1
3,373,570	+				-1.5
3,373,580	+				-0.2
3,373,580	+				+0.0
3,373,591	+				+0.8
3,373,693	+				+1.6
3,373,908	+		BPHYT_RS34605	0.13	+0.3
3,374,114	+		BPHYT_RS34605	0.41	+0.8
3,374,266	+		BPHYT_RS34605	0.62	+0.8
3,374,504	+				-0.1
3,374,745	+		BPHYT_RS34610	0.17	-2.4
3,374,745	+		BPHYT_RS34610	0.17	-1.0
3,374,746	-		BPHYT_RS34610	0.17	-2.0
3,374,892	+		BPHYT_RS34610	0.29	-2.1
3,374,974	+		BPHYT_RS34610	0.35	-2.1
3,375,028	+		BPHYT_RS34610	0.40	-3.5
3,375,028	+		BPHYT_RS34610	0.40	-2.0
3,375,029	-		BPHYT_RS34610	0.40	-1.1
3,375,705	+				-1.4
3,375,706	-				-3.6
3,375,707	+				-2.7
3,375,708	-				-3.3
3,375,790	-				-0.3
3,376,060	+				+0.6
3,376,060	+				+0.3
3,376,281	+				-0.9
3,376,281	+				+1.0
3,376,281	+				-1.3
3,376,282	-				+1.2
3,376,384	+				+0.2
3,376,516	+				-1.3