Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34510

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,348,672	-		BPHYT_RS34505	0.32	+0.2
3,348,747	+		BPHYT_RS34505	0.45	-0.3
3,348,748	-		BPHYT_RS34505	0.45	+1.0
3,349,008	+				-0.5
3,349,110	+				+0.3
3,349,111	-				-2.0
3,349,111	-				-0.5
3,349,123	+				+0.1
3,349,127	-				-0.2
3,349,356	-				-0.4
3,349,582	+		BPHYT_RS34510	0.13	+0.0
3,349,993	+		BPHYT_RS34510	0.39	-0.1
3,350,050	+		BPHYT_RS34510	0.43	-0.0
3,350,050	+		BPHYT_RS34510	0.43	+0.3
3,350,051	-		BPHYT_RS34510	0.43	-0.7
3,350,252	+		BPHYT_RS34510	0.56	-0.7
3,350,252	+		BPHYT_RS34510	0.56	-0.9
3,350,370	-		BPHYT_RS34510	0.63	+6.1
3,350,455	-		BPHYT_RS34510	0.68	+0.9
3,350,564	+		BPHYT_RS34510	0.75	+0.1
3,350,564	+		BPHYT_RS34510	0.75	-0.4
3,350,565	-		BPHYT_RS34510	0.75	-0.4
3,350,735	-		BPHYT_RS34510	0.86	+0.1
3,350,735	-		BPHYT_RS34510	0.86	-0.6
3,350,740	+		BPHYT_RS34510	0.86	+0.2
3,350,741	-		BPHYT_RS34510	0.86	+0.3
3,350,810	-				+0.9
3,351,011	+				+1.1
3,351,011	+				+0.1
3,351,056	+				+0.1
3,351,056	+				+0.1
3,351,056	+				-1.6
3,351,056	+				+1.1
3,351,056	+				+0.2
3,351,057	-				-0.1
3,351,057	-				-0.3
3,351,380	-		BPHYT_RS34515	0.31	-0.3
3,351,402	+		BPHYT_RS34515	0.33	+1.4
3,351,403	-		BPHYT_RS34515	0.33	+0.2
3,351,404	+		BPHYT_RS34515	0.33	-1.4
3,351,404	+		BPHYT_RS34515	0.33	+1.1
3,351,405	-		BPHYT_RS34515	0.33	-2.8
3,351,515	+		BPHYT_RS34515	0.41	+1.0
3,351,516	-		BPHYT_RS34515	0.41	-0.4
3,351,516	-		BPHYT_RS34515	0.41	+0.0
3,351,841	-		BPHYT_RS34515	0.66	-1.4
3,351,841	-		BPHYT_RS34515	0.66	-1.7
3,351,841	-		BPHYT_RS34515	0.66	-0.8
3,351,878	+		BPHYT_RS34515	0.68	+0.5