Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34505

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,347,881	-				-0.7
3,347,881	-				-0.5
3,348,031	-		BPHYT_RS34500	0.19	+0.4
3,348,184	-		BPHYT_RS34500	0.60	+1.6
3,348,217	-		BPHYT_RS34500	0.69	-0.5
3,348,672	-		BPHYT_RS34505	0.32	+0.2
3,348,747	+		BPHYT_RS34505	0.45	-0.3
3,348,748	-		BPHYT_RS34505	0.45	+1.0
3,349,008	+				-0.5
3,349,110	+				+0.3
3,349,111	-				-2.0
3,349,111	-				-0.5
3,349,123	+				+0.1
3,349,127	-				-0.2
3,349,356	-				-0.4
3,349,582	+		BPHYT_RS34510	0.13	+0.0
3,349,993	+		BPHYT_RS34510	0.39	-0.1
3,350,050	+		BPHYT_RS34510	0.43	-0.0
3,350,050	+		BPHYT_RS34510	0.43	+0.3
3,350,051	-		BPHYT_RS34510	0.43	-0.7