Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34450

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,337,162	-		BPHYT_RS34445	0.59	-1.2
3,337,162	-		BPHYT_RS34445	0.59	-0.2
3,337,162	-		BPHYT_RS34445	0.59	-0.4
3,337,162	-		BPHYT_RS34445	0.59	-2.5
3,337,230	+		BPHYT_RS34445	0.69	+0.0
3,337,231	-		BPHYT_RS34445	0.69	+1.0
3,337,392	-				-0.7
3,337,547	+				-0.7
3,337,579	+				-1.2
3,337,579	+				+0.5
3,337,713	-				+0.5
3,337,713	-				+0.2
3,337,721	-				-0.4
3,337,919	-		BPHYT_RS34450	0.22	-0.8
3,337,954	-		BPHYT_RS34450	0.26	+2.2
3,338,231	+		BPHYT_RS34450	0.55	+0.2
3,338,231	+		BPHYT_RS34450	0.55	+1.2
3,338,534	-		BPHYT_RS34450	0.87	+0.3
3,338,554	-		BPHYT_RS34450	0.89	+0.4
3,339,500	-				-0.8
3,339,507	-				+0.7