Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34295

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,298,410	+				+0.1
3,298,605	-		BPHYT_RS34290	0.21	-0.6
3,298,651	+		BPHYT_RS34290	0.27	+0.0
3,298,795	+		BPHYT_RS34290	0.46	-0.5
3,298,907	-		BPHYT_RS34290	0.61	-0.7
3,298,961	+		BPHYT_RS34290	0.68	+0.4
3,299,041	-		BPHYT_RS34290	0.79	+0.1
3,299,352	+		BPHYT_RS34295	0.14	-0.8
3,299,885	+				-0.5
3,300,058	+				+0.2
3,300,151	-				-0.3
3,300,682	+		BPHYT_RS34300	0.37	-0.7
3,300,683	-		BPHYT_RS34300	0.37	-1.1