Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34250

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,284,934	+		BPHYT_RS34245	0.40	+0.7
3,285,567	-		BPHYT_RS34245	0.82	+0.6
3,285,860	+				+0.2
3,286,216	+		BPHYT_RS34250	0.35	+1.9
3,286,216	+		BPHYT_RS34250	0.35	+2.2
3,286,429	+		BPHYT_RS34250	0.56	+1.7
3,286,430	-		BPHYT_RS34250	0.56	+1.0
3,286,711	+		BPHYT_RS34250	0.82	+1.7
3,286,711	+		BPHYT_RS34250	0.82	+0.2
3,286,712	-		BPHYT_RS34250	0.82	+1.2
3,286,720	+		BPHYT_RS34250	0.83	+2.4
3,286,721	-		BPHYT_RS34250	0.83	+1.1
3,286,910	-				+0.3
3,286,971	-				+1.4
3,286,971	-				+0.7
3,287,005	+				+1.4
3,287,018	-				+2.5
3,287,018	-				+2.1
3,287,020	+				+1.1
3,287,026	+				+0.6
3,287,026	+				+1.0
3,287,026	+				+1.1
3,287,027	-				+1.4
3,287,027	-				+0.9
3,287,027	-				+3.0
3,287,028	+				+1.1
3,287,029	-				+0.9
3,287,120	+				+0.7
3,287,137	+				+1.0
3,287,320	-		BPHYT_RS34255	0.19	-0.9
3,287,320	-		BPHYT_RS34255	0.19	-1.0
3,287,352	+		BPHYT_RS34255	0.23	-0.5
3,287,403	+		BPHYT_RS34255	0.30	+0.1
3,287,404	-		BPHYT_RS34255	0.30	-0.4
3,287,510	-		BPHYT_RS34255	0.43	+1.5
3,287,512	-		BPHYT_RS34255	0.43	-1.2
3,287,512	-		BPHYT_RS34255	0.43	+0.1
3,287,855	-		BPHYT_RS34255	0.87	+0.4
3,287,871	+		BPHYT_RS34255	0.89	+0.2
3,287,872	-		BPHYT_RS34255	0.89	-0.7