Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34220

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,278,850	+				-1.0
3,278,851	-				-1.2
3,278,851	-				+0.4
3,278,851	-				+0.7
3,279,016	+		BPHYT_RS34215	0.32	-0.3
3,279,024	-		BPHYT_RS34215	0.33	-0.4
3,279,142	+		BPHYT_RS34215	0.49	+0.7
3,279,143	-		BPHYT_RS34215	0.49	-0.1
3,279,143	-		BPHYT_RS34215	0.49	-0.5
3,279,143	-		BPHYT_RS34215	0.49	-0.3
3,279,204	+		BPHYT_RS34215	0.57	+1.2
3,279,204	+		BPHYT_RS34215	0.57	+0.8
3,279,205	-		BPHYT_RS34215	0.57	+0.5
3,279,525	+				+0.2
3,279,525	+				-0.1
3,279,526	-				+1.1
3,279,526	-				-0.6
3,279,671	+		BPHYT_RS34220	0.12	+1.8
3,279,672	-		BPHYT_RS34220	0.13	+3.7
3,279,756	-		BPHYT_RS34220	0.23	-0.7
3,279,980	+		BPHYT_RS34220	0.50	+0.2
3,280,350	-				+1.8
3,280,350	-				+1.6
3,280,392	+				+2.0
3,280,609	+		BPHYT_RS34225	0.20	+0.4
3,280,668	+		BPHYT_RS34225	0.25	+0.3
3,280,668	+		BPHYT_RS34225	0.25	+0.5
3,280,668	+		BPHYT_RS34225	0.25	-1.2
3,280,730	+		BPHYT_RS34225	0.31	+1.1
3,280,801	+		BPHYT_RS34225	0.38	-0.6
3,280,801	+		BPHYT_RS34225	0.38	+1.2
3,280,801	+		BPHYT_RS34225	0.38	+1.0
3,281,085	+		BPHYT_RS34225	0.65	+2.8
3,281,092	-		BPHYT_RS34225	0.66	+1.2