Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS34190

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,272,790	+				-0.5
3,272,791	-				-0.5
3,272,843	-				+0.1
3,272,843	-				-0.5
3,272,843	-				+0.5
3,272,843	-				-0.1
3,272,843	-				-0.8
3,272,843	-				-0.3
3,272,844	+				+1.0
3,272,844	+				-0.1
3,272,844	+				-1.0
3,272,845	-				-0.6
3,272,845	-				-0.3
3,272,845	-				-0.6
3,272,948	-				-0.1
3,272,948	-				+0.4
3,273,052	-				-0.5
3,273,052	-				-0.0
3,273,080	-				-0.2
3,273,080	-				-2.2
3,273,082	+				-0.5
3,273,082	+				-1.6
3,273,082	+				-1.3
3,273,082	+				+0.5
3,273,083	-				-0.9
3,273,158	+				+0.0
3,273,166	+				+0.8
3,273,190	+				-0.5
3,273,201	-				-3.6
3,273,201	-				-0.1
3,273,201	-				-1.2
3,273,201	-				-0.3
3,273,209	+				-0.3
3,273,210	-				+2.2
3,273,238	+				-0.7
3,273,267	+				-0.4
3,273,291	+				-0.3
3,273,292	-				-0.4
3,273,306	+		BPHYT_RS34185	0.13	-0.9
3,273,435	+		BPHYT_RS34185	0.76	+0.6
3,273,436	-		BPHYT_RS34185	0.76	-0.2
3,273,436	-		BPHYT_RS34185	0.76	+0.1
3,273,436	-		BPHYT_RS34185	0.76	-0.6
3,273,481	+				+0.5
3,273,495	+				-0.5
3,273,512	-				-0.1
3,273,525	+				-0.2
3,273,526	-				+2.3
3,274,513	+		BPHYT_RS34190	0.57	-0.8
3,274,513	+		BPHYT_RS34190	0.57	+0.7
3,274,513	+		BPHYT_RS34190	0.57	-1.1
3,274,603	-		BPHYT_RS34190	0.62	+0.2
3,274,730	-		BPHYT_RS34190	0.70	+0.8
3,274,730	-		BPHYT_RS34190	0.70	-0.2
3,274,746	+		BPHYT_RS34190	0.71	-0.6
3,275,175	-				-0.1
3,275,225	+				+0.2
3,275,225	+				-2.4
3,275,253	-				+1.9
3,275,253	-				-1.0
3,275,271	+				+0.4
3,275,417	-				-1.3
3,275,417	-				+0.2
3,275,417	-				-0.7
3,275,549	+		BPHYT_RS34195	0.14	+0.7
3,275,550	-		BPHYT_RS34195	0.14	+0.0
3,275,656	+		BPHYT_RS34195	0.39	+0.1
3,275,657	-		BPHYT_RS34195	0.39	-0.5
3,275,657	-		BPHYT_RS34195	0.39	-0.1
3,275,657	-		BPHYT_RS34195	0.39	+1.0
3,275,725	+		BPHYT_RS34195	0.54	-1.0
3,275,726	-		BPHYT_RS34195	0.55	-0.9
3,275,788	+		BPHYT_RS34195	0.69	+0.2
3,275,827	+		BPHYT_RS34195	0.78	-0.6
3,275,827	+		BPHYT_RS34195	0.78	-0.7
3,275,828	-		BPHYT_RS34195	0.78	+1.0
3,276,183	+		BPHYT_RS34200	0.46	+2.0