Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33955

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,207,861	-		BPHYT_RS33950	0.43	-0.8
3,207,978	-		BPHYT_RS33950	0.58	+1.2
3,208,113	+		BPHYT_RS33950	0.75	-2.4
3,208,113	+		BPHYT_RS33950	0.75	-1.2
3,208,113	+		BPHYT_RS33950	0.75	-2.0
3,208,113	+		BPHYT_RS33950	0.75	-1.1
3,208,114	-		BPHYT_RS33950	0.75	-0.4
3,208,210	-		BPHYT_RS33950	0.87	-0.8
3,208,210	-		BPHYT_RS33950	0.87	-0.8
3,208,212	-		BPHYT_RS33950	0.87	-2.6
3,208,254	-				-1.7
3,208,332	-				+0.1
3,208,332	-				-0.5
3,208,372	-				-0.6
3,208,378	+				-0.5
3,208,389	+				-1.5
3,208,422	+				-2.7
3,208,422	+				-0.2
3,208,423	-				+0.3
3,208,423	-				+0.2
3,208,642	+				+0.4
3,208,643	-				-1.3
3,208,737	-				+0.3
3,208,737	-				+0.1
3,208,737	-				-0.3
3,208,737	-				-1.2
3,208,756	+				-0.6
3,208,758	+				-1.6
3,208,758	+				-0.4
3,208,759	-				+1.0
3,209,805	-				-0.8
3,210,016	+				-1.5
3,210,016	+				-0.3
3,210,017	-				-1.8
3,210,114	+				-0.1
3,210,372	+		BPHYT_RS33960	0.33	-0.5
3,210,372	+		BPHYT_RS33960	0.33	+0.2
3,210,372	+		BPHYT_RS33960	0.33	-0.1
3,210,372	+		BPHYT_RS33960	0.33	+0.8
3,210,372	+		BPHYT_RS33960	0.33	+0.3
3,210,373	-		BPHYT_RS33960	0.33	+0.2
3,210,373	-		BPHYT_RS33960	0.33	-3.1
3,210,684	+		BPHYT_RS33960	0.63	+0.1
3,210,685	-		BPHYT_RS33960	0.64	-2.6
3,210,704	+		BPHYT_RS33960	0.65	-0.4
3,210,704	+		BPHYT_RS33960	0.65	-0.0
3,210,704	+		BPHYT_RS33960	0.65	+0.3
3,210,705	-		BPHYT_RS33960	0.65	+1.2