Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33935 and BPHYT_RS33940 are separated by 4 nucleotides BPHYT_RS33940 and BPHYT_RS33945 are separated by 3 nucleotides BPHYT_RS33945 and BPHYT_RS33950 are separated by 157 nucleotides
BPHYT_RS33935: BPHYT_RS33935 - succinate dehydrogenase flavoprotein subunit, at 3,204,789 to 3,206,564
_RS33935
BPHYT_RS33940: BPHYT_RS33940 - succinate dehydrogenase, at 3,206,569 to 3,206,937
_RS33940
BPHYT_RS33945: BPHYT_RS33945 - succinate dehydrogenase, at 3,206,941 to 3,207,357
_RS33945
BPHYT_RS33950: BPHYT_RS33950 - GntR family transcriptional regulator, at 3,207,515 to 3,208,315
_RS33950
Position (kb) 3206
3207 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3207.376 kb on - strand at 3207.445 kb on - strand at 3207.522 kb on - strand at 3207.537 kb on + strand at 3207.537 kb on + strand at 3207.537 kb on + strand at 3207.538 kb on - strand at 3207.538 kb on - strand at 3207.538 kb on - strand at 3207.555 kb on + strand at 3207.555 kb on + strand at 3207.556 kb on - strand at 3207.556 kb on - strand at 3207.591 kb on + strand at 3207.592 kb on - strand at 3207.592 kb on - strand at 3207.592 kb on - strand at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.595 kb on + strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.596 kb on - strand, within BPHYT_RS33950 at 3207.617 kb on + strand, within BPHYT_RS33950 at 3207.618 kb on - strand, within BPHYT_RS33950 at 3207.738 kb on + strand, within BPHYT_RS33950 at 3207.751 kb on + strand, within BPHYT_RS33950 at 3207.751 kb on + strand, within BPHYT_RS33950 at 3207.751 kb on + strand, within BPHYT_RS33950 at 3207.752 kb on - strand, within BPHYT_RS33950 at 3207.752 kb on - strand, within BPHYT_RS33950 at 3207.752 kb on - strand, within BPHYT_RS33950 at 3207.752 kb on - strand, within BPHYT_RS33950 at 3207.752 kb on - strand, within BPHYT_RS33950 at 3207.754 kb on - strand, within BPHYT_RS33950 at 3207.754 kb on - strand, within BPHYT_RS33950 at 3207.861 kb on - strand, within BPHYT_RS33950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 3,207,376 - -2.3 3,207,445 - +0.1 3,207,522 - -1.6 3,207,537 + -3.2 3,207,537 + -2.7 3,207,537 + -0.6 3,207,538 - -1.5 3,207,538 - -1.2 3,207,538 - -2.0 3,207,555 + -0.3 3,207,555 + -0.3 3,207,556 - -1.9 3,207,556 - -2.0 3,207,591 + +1.2 3,207,592 - +0.1 3,207,592 - +2.4 3,207,592 - +0.3 3,207,595 + BPHYT_RS33950 0.10 +0.2 3,207,595 + BPHYT_RS33950 0.10 -2.2 3,207,595 + BPHYT_RS33950 0.10 -1.5 3,207,595 + BPHYT_RS33950 0.10 +0.7 3,207,595 + BPHYT_RS33950 0.10 -3.2 3,207,595 + BPHYT_RS33950 0.10 -3.0 3,207,596 - BPHYT_RS33950 0.10 -3.3 3,207,596 - BPHYT_RS33950 0.10 -0.1 3,207,596 - BPHYT_RS33950 0.10 -1.8 3,207,596 - BPHYT_RS33950 0.10 +1.1 3,207,596 - BPHYT_RS33950 0.10 -1.8 3,207,596 - BPHYT_RS33950 0.10 -0.1 3,207,596 - BPHYT_RS33950 0.10 -0.6 3,207,596 - BPHYT_RS33950 0.10 -1.1 3,207,596 - BPHYT_RS33950 0.10 -2.5 3,207,617 + BPHYT_RS33950 0.13 -4.0 3,207,618 - BPHYT_RS33950 0.13 -0.1 3,207,738 + BPHYT_RS33950 0.28 -1.2 3,207,751 + BPHYT_RS33950 0.29 -3.5 3,207,751 + BPHYT_RS33950 0.29 -1.9 3,207,751 + BPHYT_RS33950 0.29 -0.3 3,207,752 - BPHYT_RS33950 0.30 -2.4 3,207,752 - BPHYT_RS33950 0.30 -0.2 3,207,752 - BPHYT_RS33950 0.30 -3.5 3,207,752 - BPHYT_RS33950 0.30 -1.5 3,207,752 - BPHYT_RS33950 0.30 -1.7 3,207,754 - BPHYT_RS33950 0.30 -3.2 3,207,754 - BPHYT_RS33950 0.30 -2.5 3,207,861 - BPHYT_RS33950 0.43 -0.8
Or see this region's nucleotide sequence