Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33935

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,207,376	-				-2.3
3,207,445	-				+0.1
3,207,522	-				-1.6
3,207,537	+				-3.2
3,207,537	+				-2.7
3,207,537	+				-0.6
3,207,538	-				-1.5
3,207,538	-				-1.2
3,207,538	-				-2.0
3,207,555	+				-0.3
3,207,555	+				-0.3
3,207,556	-				-1.9
3,207,556	-				-2.0