Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33925

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,202,915	-		BPHYT_RS33920	0.40	-2.5
3,203,054	+		BPHYT_RS33920	0.51	-2.7
3,203,055	-		BPHYT_RS33920	0.51	-1.6
3,203,147	+		BPHYT_RS33920	0.58	-0.9
3,203,147	+		BPHYT_RS33920	0.58	+0.2
3,203,147	+		BPHYT_RS33920	0.58	-2.5
3,203,148	-		BPHYT_RS33920	0.58	-1.1
3,203,153	+		BPHYT_RS33920	0.58	-1.5
3,203,154	-		BPHYT_RS33920	0.58	-3.2
3,203,154	-		BPHYT_RS33920	0.58	-0.8
3,203,154	-		BPHYT_RS33920	0.58	-1.6
3,203,246	+		BPHYT_RS33920	0.66	-1.8
3,203,555	+		BPHYT_RS33920	0.89	-2.3
3,203,556	-		BPHYT_RS33920	0.89	-2.3
3,203,579	+				-0.6
3,203,695	-				-2.6
3,203,714	+				-0.1
3,203,715	-				-0.9