Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33900

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,198,326	-				+0.7
3,198,326	-				-0.6
3,198,409	+				-1.1
3,198,410	-				-0.3
3,198,410	-				-1.9
3,198,411	+				-4.1
3,198,411	+				-4.4
3,198,412	-				+1.1
3,198,412	-				-0.1
3,198,474	+				+0.7
3,198,514	+				-0.3
3,198,514	+				+0.8
3,198,606	-				-5.8
3,198,675	-		BPHYT_RS33900	0.14	-4.4
3,198,767	+		BPHYT_RS33900	0.23	-5.4
3,198,768	-		BPHYT_RS33900	0.23	-6.7
3,198,932	+		BPHYT_RS33900	0.38	-0.8
3,198,932	+		BPHYT_RS33900	0.38	-3.0
3,198,932	+		BPHYT_RS33900	0.38	-5.7
3,198,932	+		BPHYT_RS33900	0.38	-2.8
3,198,932	+		BPHYT_RS33900	0.38	-3.7
3,198,933	-				-0.6
3,198,933	-		BPHYT_RS33900	0.38	-4.2
3,198,933	-		BPHYT_RS33900	0.38	-5.4
3,198,933	-		BPHYT_RS33900	0.38	-1.9
3,198,933	-		BPHYT_RS33900	0.38	-3.6
3,198,933	-		BPHYT_RS33900	0.38	-3.3
3,198,933	-		BPHYT_RS33900	0.38	-2.7
3,198,933	-		BPHYT_RS33900	0.38	-6.4
3,198,933	-		BPHYT_RS33900	0.38	-4.0
3,198,933	-		BPHYT_RS33900	0.38	-4.3
3,199,187	+		BPHYT_RS33900	0.62	-0.1
3,199,188	-		BPHYT_RS33900	0.62	-2.4
3,199,188	-		BPHYT_RS33900	0.62	-1.5
3,199,865	+		BPHYT_RS33905	0.19	-1.2
3,200,256	-		BPHYT_RS33905	0.78	-4.1
3,200,380	+				+0.4