Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33800

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,174,490	+				+0.1
3,174,490	+				-0.3
3,174,491	-				-1.1
3,174,699	-				+0.7
3,174,728	+				+0.1
3,174,728	+				-1.2
3,174,774	-				-3.0
3,174,788	+				-1.2
3,174,788	+				-0.2
3,174,789	-				-1.0
3,174,789	-				-0.5
3,174,789	-				-1.0
3,175,030	+		BPHYT_RS33800	0.14	+1.4
3,175,109	+		BPHYT_RS33800	0.17	-0.9
3,175,110	-		BPHYT_RS33800	0.17	-1.4
3,175,154	+		BPHYT_RS33800	0.19	-0.4
3,175,328	+		BPHYT_RS33800	0.25	-0.9
3,175,449	+		BPHYT_RS33800	0.29	+0.1
3,175,449	+		BPHYT_RS33800	0.29	-2.3
3,175,449	+		BPHYT_RS33800	0.29	-0.7
3,175,449	+		BPHYT_RS33800	0.29	-1.1
3,175,450	-		BPHYT_RS33800	0.29	+0.4
3,175,453	+		BPHYT_RS33800	0.29	-0.5
3,175,454	-		BPHYT_RS33800	0.29	-1.3
3,175,589	+		BPHYT_RS33800	0.34	-1.2
3,175,641	-		BPHYT_RS33800	0.36	+0.7
3,175,698	+		BPHYT_RS33800	0.38	-3.7
3,176,001	-		BPHYT_RS33800	0.48	-0.8
3,176,288	+		BPHYT_RS33800	0.58	-0.8
3,176,627	+		BPHYT_RS33800	0.70	-0.1
3,177,153	-		BPHYT_RS33800	0.89	-0.5
3,177,407	+				-1.0
3,177,510	+				+0.1
3,177,788	-		BPHYT_RS33805	0.62	-0.0
3,178,114	-		BPHYT_RS33810	0.37	+0.4
3,178,114	-		BPHYT_RS33810	0.37	-0.4
3,178,356	+		BPHYT_RS33810	0.70	+1.3