Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33790

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,170,052	+		BPHYT_RS33785	0.86	+1.8
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,134	-				-0.4
3,170,200	+				+0.3
3,170,428	+				+1.9
3,170,564	+				+0.0
3,170,847	+		BPHYT_RS33790	0.18	+0.2
3,170,888	-		BPHYT_RS33790	0.20	-0.6
3,170,918	-		BPHYT_RS33790	0.22	-0.7
3,171,134	-		BPHYT_RS33790	0.33	+0.5
3,171,160	+		BPHYT_RS33790	0.35	+1.1
3,171,520	+		BPHYT_RS33790	0.53	-0.4
3,171,523	+		BPHYT_RS33790	0.54	-1.6
3,171,523	+		BPHYT_RS33790	0.54	+0.4
3,171,524	-		BPHYT_RS33790	0.54	-0.3
3,171,533	-		BPHYT_RS33790	0.54	-0.5
3,171,811	+		BPHYT_RS33790	0.68	-0.1
3,171,847	+		BPHYT_RS33790	0.70	+2.6
3,172,107	+		BPHYT_RS33790	0.84	-0.0
3,172,324	+				-1.4
3,172,807	+		BPHYT_RS33795	0.18	+0.1
3,172,854	+		BPHYT_RS33795	0.20	-0.1
3,172,856	+		BPHYT_RS33795	0.20	-0.8