Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33785

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,167,322	+		BPHYT_RS33780	0.68	+0.7
3,167,322	+		BPHYT_RS33780	0.68	-0.8
3,167,323	-		BPHYT_RS33780	0.68	-0.9
3,167,352	+		BPHYT_RS33780	0.70	+1.2
3,167,353	-		BPHYT_RS33780	0.70	-1.0
3,167,353	-		BPHYT_RS33780	0.70	-0.7
3,167,385	+		BPHYT_RS33780	0.71	+0.3
3,167,386	-		BPHYT_RS33780	0.71	-2.5
3,167,386	-		BPHYT_RS33780	0.71	-2.0
3,167,392	-				+0.3
3,167,755	+		BPHYT_RS33780	0.88	-2.4
3,167,755	+		BPHYT_RS33780	0.88	-1.2
3,167,810	+				-1.4
3,167,811	-				+0.0
3,167,811	-				-1.1
3,167,898	+				+0.9
3,168,022	-				-0.4
3,168,960	-		BPHYT_RS33785	0.37	-1.7
3,169,029	-		BPHYT_RS33785	0.40	+2.3
3,169,029	-		BPHYT_RS33785	0.40	+0.1
3,169,029	-		BPHYT_RS33785	0.40	-0.9
3,169,063	+		BPHYT_RS33785	0.42	-1.6
3,170,052	+		BPHYT_RS33785	0.86	+1.8
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,052	+		BPHYT_RS33785	0.86	-0.2
3,170,134	-				-0.4
3,170,200	+				+0.3
3,170,428	+				+1.9
3,170,564	+				+0.0
3,170,847	+		BPHYT_RS33790	0.18	+0.2
3,170,888	-		BPHYT_RS33790	0.20	-0.6
3,170,918	-		BPHYT_RS33790	0.22	-0.7
3,171,134	-		BPHYT_RS33790	0.33	+0.5
3,171,160	+		BPHYT_RS33790	0.35	+1.1