Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33775

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,161,429	+		BPHYT_RS33770	0.75	-1.1
3,161,429	+		BPHYT_RS33770	0.75	-2.2
3,161,595	+		BPHYT_RS33770	0.80	-1.2
3,161,596	-		BPHYT_RS33770	0.80	-1.2
3,161,596	-		BPHYT_RS33770	0.80	-2.2
3,161,596	-		BPHYT_RS33770	0.80	-1.2
3,161,596	-		BPHYT_RS33770	0.80	-2.1
3,161,596	-		BPHYT_RS33770	0.80	-2.0
3,161,634	+		BPHYT_RS33770	0.82	+0.9
3,161,634	+		BPHYT_RS33770	0.82	-0.7
3,161,696	+		BPHYT_RS33770	0.83	-0.1
3,161,796	+		BPHYT_RS33770	0.86	-1.1
3,161,796	+		BPHYT_RS33770	0.86	-0.3
3,161,796	+		BPHYT_RS33770	0.86	-3.3
3,161,797	-		BPHYT_RS33770	0.86	-0.1
3,161,799	-		BPHYT_RS33770	0.87	-0.2
3,161,812	+		BPHYT_RS33770	0.87	+0.3
3,161,865	+		BPHYT_RS33770	0.89	-2.3
3,162,500	+				-1.1
3,162,626	+				-2.0
3,162,842	+		BPHYT_RS33775	0.14	-3.9
3,162,845	+		BPHYT_RS33775	0.14	-1.7
3,162,845	+		BPHYT_RS33775	0.14	-1.5
3,162,845	+		BPHYT_RS33775	0.14	-4.9
3,162,845	+		BPHYT_RS33775	0.14	-0.1
3,162,846	-		BPHYT_RS33775	0.14	-1.2
3,162,945	-		BPHYT_RS33775	0.17	-0.6
3,162,947	+		BPHYT_RS33775	0.17	-1.1
3,162,947	+		BPHYT_RS33775	0.17	-1.4
3,162,962	+		BPHYT_RS33775	0.17	-1.8
3,163,079	+		BPHYT_RS33775	0.21	-1.4
3,163,286	+		BPHYT_RS33775	0.27	-1.9
3,163,643	-		BPHYT_RS33775	0.37	-2.2
3,163,731	+		BPHYT_RS33775	0.40	-0.6
3,163,732	-		BPHYT_RS33775	0.40	-1.7
3,163,733	+		BPHYT_RS33775	0.40	-2.1
3,164,045	+		BPHYT_RS33775	0.49	-1.3
3,164,369	+		BPHYT_RS33775	0.58	-1.7
3,164,370	-		BPHYT_RS33775	0.58	-1.6
3,164,390	-		BPHYT_RS33775	0.59	-2.3
3,164,654	-		BPHYT_RS33775	0.66	-0.1
3,164,741	+		BPHYT_RS33775	0.69	-0.3
3,164,830	+		BPHYT_RS33775	0.71	-1.3
3,164,831	-		BPHYT_RS33775	0.71	-1.4
3,164,831	-		BPHYT_RS33775	0.71	-1.4
3,164,843	+		BPHYT_RS33775	0.72	-1.9
3,164,843	+		BPHYT_RS33775	0.72	-0.7
3,164,984	-		BPHYT_RS33775	0.76	-2.6
3,165,813	-				+0.0
3,165,855	-				-0.3
3,165,997	+				-2.1
3,165,998	-				+0.0
3,166,110	+		BPHYT_RS33780	0.13	-0.9
3,166,111	-		BPHYT_RS33780	0.13	-0.2
3,166,575	+		BPHYT_RS33780	0.34	-1.1
3,166,576	-		BPHYT_RS33780	0.35	-1.1