Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33745

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,151,804	+		BPHYT_RS33735	0.59	-0.9
3,151,804	+		BPHYT_RS33735	0.59	-0.7
3,151,804	+		BPHYT_RS33735	0.59	-0.3
3,151,804	+		BPHYT_RS33735	0.59	-0.9
3,151,805	-		BPHYT_RS33735	0.59	+1.3
3,152,116	+		BPHYT_RS33740	0.19	+1.2
3,152,116	+		BPHYT_RS33740	0.19	-1.4
3,152,118	+		BPHYT_RS33740	0.20	-0.6
3,152,475	+		BPHYT_RS33740	0.71	+0.8
3,152,626	-				+0.1
3,152,626	-				-0.1
3,152,708	-				+0.4
3,152,874	+		BPHYT_RS33745	0.12	+8.6
3,152,875	-		BPHYT_RS33745	0.12	+0.1
3,153,227	+		BPHYT_RS33745	0.60	+0.2
3,153,533	+				-0.2
3,153,662	-				+1.2
3,153,668	+				+1.0
3,153,669	-				+0.1
3,153,685	+				-0.5
3,153,686	-				+0.9
3,153,743	+				-1.1
3,153,743	+				+1.5
3,153,744	-				-0.4
3,153,744	-				-0.2
3,153,744	-				-0.3
3,153,744	-				-0.1
3,154,214	+		BPHYT_RS33750	0.38	+0.3
3,154,277	+		BPHYT_RS33750	0.43	-0.6
3,154,353	+		BPHYT_RS33750	0.48	-0.4
3,154,391	+		BPHYT_RS33750	0.51	-0.1