Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33635

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,130,183	+				-0.1
3,130,183	+				-0.4
3,130,183	+				-1.0
3,130,183	+				+0.9
3,130,184	-				-1.0
3,130,190	+				-0.3
3,130,190	+				+0.0
3,130,190	+				-0.1
3,130,191	-				-0.1
3,130,191	-				+3.3
3,130,243	-				+2.4
3,130,284	+		BPHYT_RS33630	0.13	-1.6
3,130,285	-		BPHYT_RS33630	0.14	-1.1
3,130,803	+				+0.5
3,130,804	-				+0.1
3,130,875	-				-1.0
3,131,001	+		BPHYT_RS33635	0.13	-0.9
3,131,002	-		BPHYT_RS33635	0.13	-3.1
3,131,310	+		BPHYT_RS33635	0.33	-2.8
3,131,311	-		BPHYT_RS33635	0.33	-2.3
3,131,476	-		BPHYT_RS33635	0.44	-0.9
3,131,544	+		BPHYT_RS33635	0.49	-0.8
3,131,545	-		BPHYT_RS33635	0.49	-2.8
3,131,545	-		BPHYT_RS33635	0.49	-2.0
3,131,581	-		BPHYT_RS33635	0.51	-2.4
3,131,659	+		BPHYT_RS33635	0.56	-1.9
3,131,662	-		BPHYT_RS33635	0.56	-3.3
3,131,670	+		BPHYT_RS33635	0.57	-2.3
3,131,670	+		BPHYT_RS33635	0.57	-2.0
3,131,679	+		BPHYT_RS33635	0.57	-3.1
3,131,679	+		BPHYT_RS33635	0.57	-1.5
3,131,680	-		BPHYT_RS33635	0.57	-2.1
3,131,688	+		BPHYT_RS33635	0.58	-1.9
3,131,722	-		BPHYT_RS33635	0.60	-2.9
3,131,722	-		BPHYT_RS33635	0.60	-1.6
3,131,806	-		BPHYT_RS33635	0.66	-1.0
3,131,806	-		BPHYT_RS33635	0.66	-1.7
3,131,806	-		BPHYT_RS33635	0.66	-0.6
3,131,806	-		BPHYT_RS33635	0.66	-1.7
3,131,806	-		BPHYT_RS33635	0.66	-0.3
3,132,015	+		BPHYT_RS33635	0.79	-2.9
3,132,015	+		BPHYT_RS33635	0.79	-2.5
3,132,016	-		BPHYT_RS33635	0.80	-2.8
3,132,016	-		BPHYT_RS33635	0.80	-3.3
3,132,019	+		BPHYT_RS33635	0.80	-2.2
3,132,101	-		BPHYT_RS33635	0.85	-1.1
3,132,138	+		BPHYT_RS33635	0.87	-1.5
3,132,317	-				-0.6
3,132,342	+				-0.3
3,132,342	+				-1.7
3,132,360	-				-0.4
3,132,461	+				+0.8
3,132,513	+				-0.5
3,132,513	+				-0.6
3,132,513	+				-0.3
3,132,738	+		BPHYT_RS33640	0.53	+1.8
3,132,918	+				+3.2
3,133,202	-				+2.3
3,133,288	+		BPHYT_RS33645	0.14	-4.2
3,133,288	+		BPHYT_RS33645	0.14	-0.7