Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33610

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,124,286	-		BPHYT_RS33605	0.53	+1.3
3,124,286	-		BPHYT_RS33605	0.53	-0.8
3,124,573	+		BPHYT_RS33605	0.74	+0.7
3,124,573	+		BPHYT_RS33605	0.74	-0.0
3,124,644	-		BPHYT_RS33605	0.80	-0.8
3,124,781	+		BPHYT_RS33605	0.90	+0.0
3,124,781	+		BPHYT_RS33605	0.90	-0.8
3,124,782	-		BPHYT_RS33605	0.90	+0.0
3,124,849	+				+2.2
3,124,908	-				+0.0
3,124,908	-				+0.1
3,124,931	+				+2.2
3,124,932	-				-0.8
3,124,932	-				+1.2
3,124,946	+				+1.1
3,125,041	+				+0.6
3,125,041	+				+1.8
3,125,041	+				+0.6
3,125,041	+				+0.9
3,125,041	+				-1.9
3,125,042	-				-0.1
3,125,042	-				-1.4
3,125,042	-				-1.0
3,125,042	-				-0.2
3,126,530	-		BPHYT_RS33610	0.53	-2.5
3,126,530	-		BPHYT_RS33610	0.53	-1.7
3,127,891	-				-0.6
3,127,987	+		BPHYT_RS33615	0.21	-2.5
3,127,987	+		BPHYT_RS33615	0.21	+1.1
3,127,987	+		BPHYT_RS33615	0.21	+1.0
3,127,988	-		BPHYT_RS33615	0.22	-0.4
3,127,988	-		BPHYT_RS33615	0.22	-1.0
3,128,564	-				-0.3
3,128,623	-				+0.8
3,128,813	-		BPHYT_RS33620	0.20	-0.8