Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33500

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,100,315	+		BPHYT_RS33495	0.33	-0.7
3,100,315	+		BPHYT_RS33495	0.33	+0.2
3,100,315	+		BPHYT_RS33495	0.33	+0.7
3,100,315	+		BPHYT_RS33495	0.33	+0.3
3,100,315	+		BPHYT_RS33495	0.33	+0.2
3,100,315	+		BPHYT_RS33495	0.33	-1.3
3,100,315	+		BPHYT_RS33495	0.33	-1.7
3,100,316	-		BPHYT_RS33495	0.33	+0.3
3,100,316	-		BPHYT_RS33495	0.33	-0.3
3,100,316	-		BPHYT_RS33495	0.33	+0.2
3,100,316	-		BPHYT_RS33495	0.33	+0.8
3,100,316	-		BPHYT_RS33495	0.33	-0.5
3,100,385	+		BPHYT_RS33495	0.43	-0.5
3,100,385	+		BPHYT_RS33495	0.43	-1.5
3,100,458	+		BPHYT_RS33495	0.52	-0.2
3,100,459	-		BPHYT_RS33495	0.53	-0.5
3,100,608	-		BPHYT_RS33495	0.73	-0.6
3,100,608	-		BPHYT_RS33495	0.73	+0.7
3,100,750	+				+1.2
3,100,751	-				-1.3
3,100,810	+				-0.5
3,100,810	+				+0.4
3,100,810	+				-0.3
3,100,811	-				-0.5
3,100,811	-				-0.4
3,100,934	+				+0.6
3,100,934	+				-1.7
3,100,934	+				+2.2
3,100,934	+				+0.6
3,100,935	-				-0.9
3,100,935	-				+0.1
3,100,978	-				-0.4
3,101,081	+				+1.8
3,101,165	+		BPHYT_RS33500	0.11	+0.0
3,101,247	-		BPHYT_RS33500	0.16	+0.6
3,101,455	+		BPHYT_RS33500	0.30	+2.2
3,101,519	+		BPHYT_RS33500	0.34	-0.2
3,101,520	-		BPHYT_RS33500	0.34	-3.3
3,101,546	+		BPHYT_RS33500	0.35	-0.4
3,101,546	+		BPHYT_RS33500	0.35	+1.6
3,101,547	-		BPHYT_RS33500	0.35	-0.6
3,102,055	+		BPHYT_RS33500	0.68	-0.3
3,102,055	+		BPHYT_RS33500	0.68	+0.9
3,102,115	+		BPHYT_RS33500	0.72	+0.0
3,102,116	-		BPHYT_RS33500	0.72	+2.0
3,102,322	-		BPHYT_RS33500	0.85	-1.9
3,102,349	+		BPHYT_RS33500	0.87	+0.8
3,102,363	+		BPHYT_RS33500	0.88	-0.2
3,102,363	+		BPHYT_RS33500	0.88	-0.1
3,102,364	-		BPHYT_RS33500	0.88	-1.3
3,102,563	-				-0.7
3,102,614	+				-0.1
3,102,614	+				-0.4
3,102,615	-				+0.7
3,102,615	-				-1.3
3,102,650	+				+0.3
3,102,675	+				+2.8
3,102,676	-				-0.0
3,102,707	-				-0.1
3,102,786	+		BPHYT_RS33505	0.34	-0.1
3,102,786	+		BPHYT_RS33505	0.34	-0.6
3,102,786	+		BPHYT_RS33505	0.34	+0.1
3,102,787	-		BPHYT_RS33505	0.35	-0.6
3,102,787	-		BPHYT_RS33505	0.35	+0.1
3,102,787	-		BPHYT_RS33505	0.35	+0.4
3,102,789	+		BPHYT_RS33505	0.35	-0.7
3,102,790	-		BPHYT_RS33505	0.36	-0.5
3,102,981	+				+0.1
3,103,033	-				+0.1
3,103,053	+				-0.2
3,103,053	+				+0.3
3,103,054	-				+0.2
3,103,054	-				-0.9
3,103,076	+				-0.1
3,103,076	+				+0.3
3,103,076	+				+0.2
3,103,076	+				-0.5
3,103,106	-				+0.7
3,103,106	-				+0.1
3,103,131	+				+0.2
3,103,162	+				+3.5
3,103,163	-				+0.8
3,103,175	-				+1.7
3,103,175	-				+0.1
3,103,175	-				+0.6
3,103,180	-				-0.8
3,103,220	+				-0.8
3,103,272	+				+0.5
3,103,273	-				+0.2
3,103,273	-				+1.2
3,103,280	-				+0.4
3,103,287	+				-0.6
3,103,287	+				+0.1
3,103,287	+				+1.2
3,103,288	-				+0.5
3,103,401	-				-0.5
3,103,401	-				+1.4
3,103,401	-				+1.6
3,103,428	-		BPHYT_RS33510	0.10	+0.7