Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33270

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,045,731	+				-2.3
3,046,087	-		BPHYT_RS33265	0.42	+0.2
3,046,239	-		BPHYT_RS33265	0.56	-0.2
3,046,239	-		BPHYT_RS33265	0.56	+0.7
3,046,239	-		BPHYT_RS33265	0.56	+0.6
3,046,659	-				+0.5
3,046,659	-				-0.8
3,046,821	-		BPHYT_RS33270	0.23	+0.7
3,046,979	+		BPHYT_RS33270	0.52	+0.8
3,046,984	-		BPHYT_RS33270	0.53	+1.2
3,046,984	-		BPHYT_RS33270	0.53	-0.6
3,047,047	-		BPHYT_RS33270	0.64	+0.7
3,047,119	+		BPHYT_RS33270	0.78	-0.2
3,047,120	-		BPHYT_RS33270	0.78	+1.5
3,047,120	-		BPHYT_RS33270	0.78	+0.6
3,047,371	+				-0.0
3,047,674	+		BPHYT_RS33275	0.20	-0.5
3,047,720	-		BPHYT_RS33275	0.22	-0.5
3,047,720	-		BPHYT_RS33275	0.22	-0.2
3,048,227	+		BPHYT_RS33275	0.52	-0.2