Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33225

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,032,117	+		BPHYT_RS33220	0.74	+2.3
3,032,129	+		BPHYT_RS33220	0.74	+2.8
3,032,130	-		BPHYT_RS33220	0.74	-0.7
3,032,133	-		BPHYT_RS33220	0.74	+0.1
3,032,133	-		BPHYT_RS33220	0.74	-1.4
3,032,269	-		BPHYT_RS33220	0.81	+1.3
3,032,628	+				+1.8
3,032,664	+				+2.2
3,032,720	-				+0.4
3,033,075	+				+0.0
3,033,151	-				-1.1
3,033,151	-				+2.0
3,033,332	+		BPHYT_RS33225	0.23	-0.4
3,033,575	-		BPHYT_RS33225	0.49	+4.1
3,033,606	+		BPHYT_RS33225	0.52	+0.6
3,033,614	+		BPHYT_RS33225	0.53	+0.6
3,033,619	-		BPHYT_RS33225	0.53	+0.2
3,033,656	+		BPHYT_RS33225	0.57	+4.2
3,033,657	-		BPHYT_RS33225	0.57	-0.1
3,033,773	+		BPHYT_RS33225	0.70	+0.9
3,033,796	+		BPHYT_RS33225	0.72	-0.3
3,034,065	+				+0.3
3,034,111	-				+0.9
3,034,127	-				-0.1
3,034,194	-				+1.0
3,034,225	-				-0.1
3,034,225	-				+2.0
3,034,258	-				+0.2
3,034,397	-				+0.5
3,034,409	+				+1.8
3,034,457	-				-1.5
3,034,463	+				-0.7
3,034,695	-				+0.2
3,034,756	-				-0.9
3,034,828	-				+1.8
3,034,877	+				-2.4
3,034,878	-				-2.3
3,034,997	+				+0.8
3,034,997	+				-0.5
3,034,998	-				+1.3
3,034,998	-				+1.6
3,034,998	-				+0.7