Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33180

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,019,053	-		BPHYT_RS33175	0.69	+1.3
3,019,053	-		BPHYT_RS33175	0.69	+0.4
3,019,340	+				+0.6
3,019,342	+				+3.6
3,019,389	+				-0.1
3,019,462	-				-0.2
3,019,472	-				-3.9
3,019,485	-				-0.1
3,019,497	-				-0.8
3,019,497	-				-1.2
3,019,497	-				+1.2
3,019,779	+				+1.7
3,020,006	+				+0.3
3,020,049	+				+3.2
3,020,127	+				-0.2
3,020,198	+		BPHYT_RS33180	0.13	+0.4
3,020,199	-		BPHYT_RS33180	0.13	-1.7
3,020,199	-		BPHYT_RS33180	0.13	-0.3
3,020,374	-		BPHYT_RS33180	0.25	+0.4
3,021,028	+		BPHYT_RS33180	0.68	+1.4
3,021,028	+		BPHYT_RS33180	0.68	+1.0
3,021,028	+		BPHYT_RS33180	0.68	+0.5
3,021,029	-		BPHYT_RS33180	0.68	+1.1
3,021,029	-		BPHYT_RS33180	0.68	+5.5
3,021,029	-		BPHYT_RS33180	0.68	-0.1
3,021,093	+		BPHYT_RS33180	0.72	-1.2
3,021,093	+		BPHYT_RS33180	0.72	+0.1
3,021,094	-		BPHYT_RS33180	0.72	+0.2
3,021,094	-		BPHYT_RS33180	0.72	+3.3
3,021,104	+		BPHYT_RS33180	0.73	-0.1
3,021,321	+		BPHYT_RS33180	0.87	+0.8
3,021,328	+		BPHYT_RS33180	0.88	+2.3
3,021,402	+				+0.7
3,021,403	-				+1.0
3,021,403	-				+1.8
3,021,523	+				+0.5
3,021,544	-				-0.3
3,022,243	-				-1.2
3,022,300	-				+0.8
3,022,309	+				+0.7
3,022,445	+				+0.7
3,022,445	+				+0.8
3,022,461	-				-0.3
3,022,462	+				+3.3
3,022,463	-				+1.1