Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32955

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,973,291	+				+0.6
2,973,355	+				-0.6
2,973,383	+				-0.8
2,973,383	+				-0.4
2,973,383	+				+0.0
2,973,384	-				-0.7
2,973,418	+				-0.5
2,973,419	-				-0.5
2,973,419	-				+0.1
2,973,429	+				+4.4
2,973,491	+		BPHYT_RS32955	0.11	+1.5
2,973,703	+		BPHYT_RS32955	0.44	-0.7
2,973,741	-		BPHYT_RS32955	0.49	-2.3
2,973,822	+		BPHYT_RS32955	0.62	+1.8
2,973,914	-		BPHYT_RS32955	0.76	+0.4
2,973,914	-		BPHYT_RS32955	0.76	-0.9
2,974,029	-				+2.6
2,974,053	-				+1.0
2,974,073	+				-0.5
2,974,074	-				+1.4
2,974,320	-		BPHYT_RS32960	0.32	+1.5
2,974,320	-		BPHYT_RS32960	0.32	-1.0
2,974,833	+				+0.3
2,974,834	-				-0.8
2,974,852	-				-0.4
2,974,852	-				-1.3
2,974,861	-				+0.5
2,974,886	-				+1.3