Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32935

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,968,300	-				-0.7
2,968,341	-				-0.1
2,968,430	-				+0.6
2,968,481	+				-0.9
2,968,751	-		BPHYT_RS32930	0.66	-1.8
2,968,850	-		BPHYT_RS32930	0.89	-0.6
2,968,918	+				-1.5
2,968,919	-				-1.1
2,968,967	-				-2.9
2,969,134	+		BPHYT_RS32935	0.24	-0.9
2,969,255	-		BPHYT_RS32935	0.40	-0.7
2,969,276	-		BPHYT_RS32935	0.43	+0.5
2,969,309	+		BPHYT_RS32935	0.47	-0.2
2,969,497	+		BPHYT_RS32935	0.72	-0.9
2,970,107	-		BPHYT_RS32940	0.42	-0.8
2,970,423	+		BPHYT_RS32940	0.84	-0.7
2,970,492	+				-1.2