Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32920

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,965,311	-		BPHYT_RS32915	0.23	-0.1
2,965,363	-		BPHYT_RS32915	0.28	-0.5
2,965,504	+		BPHYT_RS32915	0.44	-0.0
2,965,505	-		BPHYT_RS32915	0.44	+0.0
2,965,535	-		BPHYT_RS32915	0.47	-0.7
2,965,614	+		BPHYT_RS32915	0.56	+0.2
2,966,102	-				+0.7
2,966,112	+				+0.3
2,966,112	+				-0.4
2,966,112	+				-0.4
2,966,112	+				+0.1
2,966,112	+				-0.8
2,966,112	+				-0.9
2,966,113	-				+0.1
2,966,305	-		BPHYT_RS32920	0.14	+3.5
2,966,305	-		BPHYT_RS32920	0.14	-0.1
2,966,634	+		BPHYT_RS32920	0.53	+2.8
2,966,635	-		BPHYT_RS32920	0.54	+0.2
2,966,826	+		BPHYT_RS32920	0.76	-0.7
2,966,827	-		BPHYT_RS32920	0.76	-0.1
2,966,882	+		BPHYT_RS32920	0.83	-0.5
2,966,882	+		BPHYT_RS32920	0.83	+0.8
2,966,970	+				-0.4
2,967,086	-				+0.5
2,967,289	+		BPHYT_RS32925	0.16	-0.8
2,967,847	-		BPHYT_RS32925	0.57	-0.7
2,967,893	+		BPHYT_RS32925	0.60	-0.1