Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32900

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,960,708	+		BPHYT_RS32895	0.46	+2.2
2,960,709	-		BPHYT_RS32895	0.46	-0.0
2,960,712	+		BPHYT_RS32895	0.46	+0.3
2,960,713	-		BPHYT_RS32895	0.46	+0.9
2,960,713	-		BPHYT_RS32895	0.46	-0.5
2,960,805	-		BPHYT_RS32895	0.53	-0.5
2,961,200	-		BPHYT_RS32895	0.80	-0.3
2,961,200	-		BPHYT_RS32895	0.80	-1.9
2,961,200	-		BPHYT_RS32895	0.80	-0.4
2,961,234	-		BPHYT_RS32895	0.83	+2.2
2,961,480	-				+0.4
2,961,634	-				+0.3
2,961,649	-				-2.0
2,961,969	+		BPHYT_RS32900	0.33	-1.2
2,961,970	-		BPHYT_RS32900	0.33	+0.8
2,962,020	-		BPHYT_RS32900	0.37	+1.8
2,962,025	-		BPHYT_RS32900	0.38	-0.2
2,962,025	-		BPHYT_RS32900	0.38	+4.3
2,962,107	+		BPHYT_RS32900	0.44	-0.4
2,962,685	+		BPHYT_RS32900	0.88	+0.2
2,962,686	-		BPHYT_RS32900	0.88	+0.2
2,962,883	+				-2.4
2,962,902	+				-0.6
2,963,528	-		BPHYT_RS32905	0.48	+0.3
2,963,653	+		BPHYT_RS32905	0.57	+1.9
2,963,688	-		BPHYT_RS32905	0.60	-0.5