Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32885

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,956,257	-		BPHYT_RS32880	0.82	-0.6
2,956,283	-		BPHYT_RS32880	0.86	+0.7
2,956,361	-				-0.4
2,956,894	+				-1.6
2,956,895	-				+0.1
2,957,083	+				+0.7
2,957,579	+		BPHYT_RS32885	0.32	+1.2
2,957,710	+		BPHYT_RS32885	0.40	-0.2
2,957,778	+		BPHYT_RS32885	0.44	+0.6
2,957,852	-		BPHYT_RS32885	0.48	+2.2
2,958,256	+		BPHYT_RS32885	0.71	+0.5
2,958,598	-				+0.2
2,958,598	-				-0.5
2,958,780	+				-0.4
2,958,780	+				+1.0
2,958,780	+				+2.5
2,958,823	+				+1.4
2,958,884	-				+0.8
2,958,952	-				+0.3
2,959,003	+				-0.3
2,959,004	-				-1.0
2,959,042	+				-1.5
2,959,042	+				-0.9