Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32845

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,949,675	-				-0.4
2,949,873	-				+1.8
2,950,124	+				-0.7
2,950,454	+		BPHYT_RS32845	0.16	+0.4
2,950,463	+		BPHYT_RS32845	0.17	+0.7
2,950,864	+		BPHYT_RS32845	0.53	+1.1
2,951,169	-				-0.1
2,951,200	+		BPHYT_RS32845	0.83	-2.3
2,951,522	+				+0.2
2,951,555	+		BPHYT_RS32850	0.13	+0.1
2,951,706	+		BPHYT_RS32850	0.55	-0.2