Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32780

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,932,041	+		BPHYT_RS32770	0.82	-0.0
2,932,273	-				-1.2
2,932,347	-				+0.2
2,932,347	-				-0.8
2,932,415	-				+0.4
2,932,641	+		BPHYT_RS32775	0.42	+0.7
2,932,641	+		BPHYT_RS32775	0.42	-0.7
2,932,942	+				+0.1
2,932,943	-				+0.6
2,933,006	-				-0.1
2,933,006	-				-0.4
2,933,107	+				-0.6
2,933,179	+		BPHYT_RS32780	0.12	-0.3
2,933,179	+		BPHYT_RS32780	0.12	-0.3
2,933,257	+		BPHYT_RS32780	0.15	-1.4
2,933,258	-		BPHYT_RS32780	0.15	-0.0
2,933,258	-		BPHYT_RS32780	0.15	+1.1
2,933,280	+		BPHYT_RS32780	0.16	-1.2
2,933,280	+		BPHYT_RS32780	0.16	-1.5
2,933,280	+		BPHYT_RS32780	0.16	-0.2
2,933,281	-		BPHYT_RS32780	0.16	+1.0
2,933,281	-		BPHYT_RS32780	0.16	-0.5
2,933,281	-		BPHYT_RS32780	0.16	+2.4
2,933,281	-		BPHYT_RS32780	0.16	-0.5
2,933,581	+		BPHYT_RS32780	0.31	+0.3
2,933,603	+		BPHYT_RS32780	0.32	+0.6
2,933,604	-		BPHYT_RS32780	0.32	-1.3
2,933,689	+		BPHYT_RS32780	0.36	-0.2
2,933,690	-		BPHYT_RS32780	0.36	-0.4
2,933,789	-		BPHYT_RS32780	0.41	-0.5
2,934,023	-		BPHYT_RS32780	0.52	+0.1
2,934,089	+		BPHYT_RS32780	0.55	+0.4
2,934,216	+		BPHYT_RS32780	0.61	+0.4
2,934,216	+		BPHYT_RS32780	0.61	-0.6
2,934,238	+		BPHYT_RS32780	0.62	+0.1
2,934,238	+		BPHYT_RS32780	0.62	+0.5
2,934,239	-		BPHYT_RS32780	0.62	-0.5
2,934,239	-		BPHYT_RS32780	0.62	-0.7
2,934,403	+		BPHYT_RS32780	0.70	-0.3
2,934,464	-		BPHYT_RS32780	0.73	-2.1
2,934,470	-		BPHYT_RS32780	0.73	-0.1
2,934,576	-		BPHYT_RS32780	0.78	+0.0
2,934,794	-		BPHYT_RS32780	0.88	+3.4
2,935,243	+		BPHYT_RS32785	0.74	+0.5
2,935,243	+		BPHYT_RS32785	0.74	+0.9
2,935,243	+		BPHYT_RS32785	0.74	+0.6
2,935,244	-		BPHYT_RS32785	0.75	+0.4
2,935,286	+				-1.5
2,935,383	+				+0.4
2,935,386	+				+0.8
2,935,386	+				+0.5
2,935,387	-				-0.4
2,935,466	+		BPHYT_RS32790	0.17	+0.9
2,935,539	+		BPHYT_RS32790	0.24	-0.1
2,935,812	+		BPHYT_RS32790	0.51	-0.8
2,935,813	-		BPHYT_RS32790	0.51	-0.3