Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32770

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,930,067	-		BPHYT_RS32765	0.60	-0.7
2,930,244	-		BPHYT_RS32765	0.72	-0.0
2,930,418	-				+2.3
2,930,418	-		BPHYT_RS32765	0.83	+0.1
2,930,418	-		BPHYT_RS32765	0.83	-0.8
2,930,418	-		BPHYT_RS32765	0.83	+0.6
2,930,610	-				-0.9
2,930,675	-				-1.0
2,930,911	+		BPHYT_RS32770	0.14	-0.1
2,931,065	+		BPHYT_RS32770	0.24	-1.7
2,931,145	+		BPHYT_RS32770	0.28	-0.8
2,931,471	+		BPHYT_RS32770	0.48	-1.0
2,931,474	+		BPHYT_RS32770	0.48	-0.8
2,931,536	-		BPHYT_RS32770	0.52	-0.9
2,931,833	+		BPHYT_RS32770	0.70	+0.1
2,931,834	-		BPHYT_RS32770	0.70	-0.9
2,932,041	+		BPHYT_RS32770	0.82	-0.0
2,932,273	-				-1.2
2,932,347	-				+0.2
2,932,347	-				-0.8
2,932,415	-				+0.4
2,932,641	+		BPHYT_RS32775	0.42	+0.7
2,932,641	+		BPHYT_RS32775	0.42	-0.7
2,932,942	+				+0.1
2,932,943	-				+0.6
2,933,006	-				-0.1
2,933,006	-				-0.4
2,933,107	+				-0.6
2,933,179	+		BPHYT_RS32780	0.12	-0.3
2,933,179	+		BPHYT_RS32780	0.12	-0.3
2,933,257	+		BPHYT_RS32780	0.15	-1.4
2,933,258	-		BPHYT_RS32780	0.15	-0.0
2,933,258	-		BPHYT_RS32780	0.15	+1.1
2,933,280	+		BPHYT_RS32780	0.16	-1.2
2,933,280	+		BPHYT_RS32780	0.16	-1.5
2,933,280	+		BPHYT_RS32780	0.16	-0.2
2,933,281	-		BPHYT_RS32780	0.16	+1.0
2,933,281	-		BPHYT_RS32780	0.16	-0.5
2,933,281	-		BPHYT_RS32780	0.16	+2.4
2,933,281	-		BPHYT_RS32780	0.16	-0.5