Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32750

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,924,782	+		BPHYT_RS32745	0.28	+0.0
2,924,914	+		BPHYT_RS32745	0.38	+1.3
2,924,926	+		BPHYT_RS32745	0.39	-2.0
2,924,926	+		BPHYT_RS32745	0.39	+0.4
2,924,927	-		BPHYT_RS32745	0.39	+1.0
2,924,927	-		BPHYT_RS32745	0.39	+0.4
2,924,942	-		BPHYT_RS32745	0.40	-0.4
2,925,098	-		BPHYT_RS32745	0.52	-1.4
2,925,478	+		BPHYT_RS32745	0.80	+0.3
2,926,366	-		BPHYT_RS32750	0.61	+1.7
2,926,794	-				-0.4
2,926,794	-				-0.3
2,927,034	+		BPHYT_RS32755	0.12	-0.4
2,927,034	+		BPHYT_RS32755	0.12	-0.1
2,927,035	-		BPHYT_RS32755	0.12	-0.1
2,927,035	-		BPHYT_RS32755	0.12	+0.2
2,927,060	-		BPHYT_RS32755	0.15	-0.1
2,927,061	+		BPHYT_RS32755	0.15	-2.2
2,927,061	+		BPHYT_RS32755	0.15	+0.4
2,927,124	+		BPHYT_RS32755	0.21	-0.5
2,927,183	+		BPHYT_RS32755	0.26	-1.4
2,927,226	+		BPHYT_RS32755	0.31	-0.5
2,927,578	-		BPHYT_RS32755	0.64	-0.8
2,927,634	+		BPHYT_RS32755	0.69	-1.0