Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32535

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,870,558	+		BPHYT_RS32530	0.40	-0.4
2,870,575	+		BPHYT_RS32530	0.41	-1.1
2,870,640	-		BPHYT_RS32530	0.45	+0.6
2,870,690	+		BPHYT_RS32530	0.48	-0.6
2,870,690	+		BPHYT_RS32530	0.48	+2.8
2,870,919	+		BPHYT_RS32530	0.63	-0.5
2,870,919	+		BPHYT_RS32530	0.63	-1.5
2,871,366	-				+0.9
2,871,502	-				+0.1
2,871,592	+		BPHYT_RS32535	0.19	-0.0
2,871,646	+		BPHYT_RS32535	0.34	-0.6
2,871,646	+		BPHYT_RS32535	0.34	-0.3
2,871,746	+		BPHYT_RS32535	0.63	-0.4
2,871,845	+				+0.2
2,871,845	+				-0.0
2,871,846	-				+0.2
2,871,846	-				-0.5
2,872,082	+				-2.4
2,872,267	-		BPHYT_RS32540	0.79	-1.1
2,872,370	+				+0.9