Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32515

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,865,338	+				+1.5
2,865,879	-		BPHYT_RS32510	0.70	-1.0
2,866,085	+				+0.6
2,866,490	-		BPHYT_RS32515	0.22	-0.2
2,866,508	-		BPHYT_RS32515	0.24	+0.6
2,866,752	+		BPHYT_RS32515	0.44	+1.6
2,866,830	+		BPHYT_RS32515	0.50	-0.1
2,866,897	+		BPHYT_RS32515	0.56	-0.4
2,866,898	-		BPHYT_RS32515	0.56	-0.0
2,867,209	+		BPHYT_RS32515	0.82	-0.5
2,867,549	-				-0.9
2,867,560	+				+0.1
2,867,977	+		BPHYT_RS32520	0.32	+0.6
2,868,036	-		BPHYT_RS32520	0.39	-0.5
2,868,247	+		BPHYT_RS32520	0.64	-1.3