Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32225

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,799,346	+				-0.6
2,799,512	-		BPHYT_RS32225	0.28	+3.1
2,799,730	-		BPHYT_RS32225	0.82	-1.9
2,799,736	-		BPHYT_RS32225	0.84	-0.7
2,799,828	+				+0.4
2,799,893	+				+0.5
2,799,957	+				+0.3
2,799,958	-				-1.0
2,800,073	-				-1.4
2,800,157	-		BPHYT_RS32230	0.15	-0.8
2,800,157	-		BPHYT_RS32230	0.15	-0.9
2,800,186	+		BPHYT_RS32230	0.18	-0.5
2,800,203	-		BPHYT_RS32230	0.20	-0.8
2,800,479	-		BPHYT_RS32230	0.49	+0.6
2,800,729	-		BPHYT_RS32230	0.76	+0.0