Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32145

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,784,629	+		BPHYT_RS32140	0.72	-0.7
2,784,630	-		BPHYT_RS32140	0.72	-1.1
2,784,708	-		BPHYT_RS32140	0.76	-0.9
2,785,140	+				-1.3
2,785,140	+				+1.8
2,785,140	+				-0.5
2,785,141	-				+0.7
2,785,141	-				-1.0
2,785,328	-		BPHYT_RS32145	0.11	-2.0
2,785,408	+		BPHYT_RS32145	0.15	-0.2
2,785,409	-		BPHYT_RS32145	0.15	-1.9
2,785,585	+		BPHYT_RS32145	0.25	-0.7
2,785,826	-		BPHYT_RS32145	0.39	-0.8
2,785,859	+		BPHYT_RS32145	0.41	-1.8
2,785,859	+		BPHYT_RS32145	0.41	-1.6
2,785,946	-		BPHYT_RS32145	0.46	-1.1
2,786,135	-		BPHYT_RS32145	0.57	-0.9
2,786,414	-		BPHYT_RS32145	0.73	-1.0
2,786,581	-		BPHYT_RS32145	0.82	-1.5
2,786,740	+				+0.1
2,786,847	+				-1.1
2,786,946	+		BPHYT_RS32150	0.14	+0.5
2,787,006	-		BPHYT_RS32150	0.28	+1.1
2,787,147	+		BPHYT_RS32150	0.63	+0.2
2,787,710	-		BPHYT_RS32155	0.36	+0.5
2,787,816	-		BPHYT_RS32155	0.46	-1.1
2,787,816	-		BPHYT_RS32155	0.46	+0.2