Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32130

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,780,458	-		BPHYT_RS32125	0.31	-0.3
2,780,678	+		BPHYT_RS32125	0.52	+2.0
2,780,678	+		BPHYT_RS32125	0.52	-1.4
2,780,678	+		BPHYT_RS32125	0.52	-0.4
2,780,779	+		BPHYT_RS32125	0.62	-0.6
2,780,848	+		BPHYT_RS32125	0.69	+0.7
2,780,849	-		BPHYT_RS32125	0.69	+1.7
2,780,916	+		BPHYT_RS32125	0.76	-0.1
2,780,916	+		BPHYT_RS32125	0.76	-0.9
2,780,917	-		BPHYT_RS32125	0.76	-2.8
2,780,986	+		BPHYT_RS32125	0.83	-1.5
2,780,987	-		BPHYT_RS32125	0.83	+0.5
2,781,278	+		BPHYT_RS32130	0.13	-0.4
2,781,278	+		BPHYT_RS32130	0.13	-0.1
2,781,278	+		BPHYT_RS32130	0.13	-0.6
2,781,279	-		BPHYT_RS32130	0.13	+0.6
2,781,698	-				-0.6
2,781,708	-				-0.1
2,782,115	-		BPHYT_RS32135	0.27	-0.4
2,782,162	+		BPHYT_RS32135	0.30	-1.3
2,782,163	-		BPHYT_RS32135	0.30	+0.4
2,782,163	-		BPHYT_RS32135	0.30	+2.9
2,782,163	-		BPHYT_RS32135	0.30	+0.9
2,782,186	+		BPHYT_RS32135	0.31	+1.3
2,782,328	+		BPHYT_RS32135	0.41	-1.2
2,782,328	+		BPHYT_RS32135	0.41	+0.9
2,782,328	+		BPHYT_RS32135	0.41	-0.0
2,782,398	-		BPHYT_RS32135	0.45	-0.4
2,782,564	+		BPHYT_RS32135	0.56	+0.2
2,782,564	+		BPHYT_RS32135	0.56	-1.3
2,782,564	+		BPHYT_RS32135	0.56	+0.3
2,782,565	-		BPHYT_RS32135	0.56	-1.8
2,782,565	-		BPHYT_RS32135	0.56	-0.0
2,782,570	+		BPHYT_RS32135	0.57	+0.3
2,782,571	-		BPHYT_RS32135	0.57	-0.6