Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32010

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,741,875	+				-0.6
2,741,875	+				-0.7
2,741,875	+				-1.1
2,741,876	-				+3.0
2,741,974	+				+0.1
2,741,975	-				-0.7
2,742,054	-		BPHYT_RS32010	0.10	+1.7
2,742,064	+		BPHYT_RS32010	0.11	+0.8
2,742,092	+		BPHYT_RS32010	0.12	-1.2
2,742,092	+		BPHYT_RS32010	0.12	-0.7
2,742,216	-		BPHYT_RS32010	0.17	-0.4
2,742,266	+		BPHYT_RS32010	0.19	+0.9
2,742,298	-		BPHYT_RS32010	0.20	+1.1
2,743,007	+		BPHYT_RS32010	0.47	+0.1
2,743,076	-		BPHYT_RS32010	0.50	+0.0
2,743,169	+		BPHYT_RS32010	0.53	-0.2
2,743,169	+		BPHYT_RS32010	0.53	+1.2
2,743,596	-		BPHYT_RS32010	0.70	-0.2
2,743,620	-		BPHYT_RS32010	0.71	-0.4
2,743,817	+		BPHYT_RS32010	0.78	-0.1
2,743,852	+		BPHYT_RS32010	0.80	-0.9
2,743,853	-		BPHYT_RS32010	0.80	-0.9
2,743,853	-		BPHYT_RS32010	0.80	+0.8
2,743,853	-		BPHYT_RS32010	0.80	-0.5
2,743,855	-		BPHYT_RS32010	0.80	-0.0
2,743,928	+		BPHYT_RS32010	0.83	+0.6
2,744,041	+		BPHYT_RS32010	0.87	-0.7
2,744,121	+				+0.1
2,744,199	+				+0.9
2,744,200	-				+0.1
2,744,582	-		BPHYT_RS32015	0.12	-0.7
2,744,784	+		BPHYT_RS32015	0.23	+0.8
2,744,836	-		BPHYT_RS32015	0.26	+0.0
2,745,022	+		BPHYT_RS32015	0.36	-0.1
2,745,022	+		BPHYT_RS32015	0.36	+0.6
2,745,109	-		BPHYT_RS32015	0.41	-0.2
2,745,138	-		BPHYT_RS32015	0.42	-1.5
2,745,180	+		BPHYT_RS32015	0.45	-1.3
2,745,181	-		BPHYT_RS32015	0.45	-0.5