Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31680

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,662,153	-		BPHYT_RS31670	0.87	-0.5
2,662,227	-				-0.2
2,662,554	+		BPHYT_RS31675	0.18	-0.5
2,662,696	-		BPHYT_RS31675	0.61	-0.2
2,662,923	-				-0.8
2,662,938	-				+0.6
2,662,940	+				-1.1
2,662,944	+				-0.2
2,663,263	-		BPHYT_RS31680	0.35	-0.7
2,663,354	+		BPHYT_RS31680	0.45	+0.8
2,663,378	+		BPHYT_RS31680	0.48	+4.9
2,663,527	-		BPHYT_RS31680	0.64	-0.6
2,663,647	-		BPHYT_RS31680	0.78	-1.1
2,663,844	+				+0.1
2,664,285	-		BPHYT_RS31685	0.39	+2.2
2,664,307	-		BPHYT_RS31685	0.41	+0.0
2,664,582	+		BPHYT_RS31685	0.69	+1.0